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Yeast Genome > Frequency Of Optimal Codons (Fop)
The following information is about Frequency Of Optimal Codons (Fop).
Frequency Of Optimal Codons (Fop) Defined
This index is the ratio of optimal codons to synonymous codons (genetic code dependent). Fop values for the original index are always between 0 (where no optimal codons are used) and 1 (where only optimal codons are used). When calculating the modified Fop index, negative values are adjusted to zero. [Ikemura, T. (1981). Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes: a proposal for a synonymous codon choice that is optimal for the E. coli system. Journal of Molecular Biology 151: 389-409.]
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